Friday, January 24, 2014

Description of Mapping Tumor Markers

The idea of grid-computing is a broad collaboration of computer systems that are non-interactive.  The non-interactive systems involve large numbers of files which are collected as a resource to reach a common goal, such as trying to find a cure for a disease. There are different types of grids that are used being a single grid or clustered.  Many of the single grids are used for operating systems that retain information specific to a certain place, such as a library software.  There are many applications for grid-computing to solve Grand Challenge problems which include: protein folding, finance modeling, different simulations, and weather/climate modeling.  Universities use existing computers to handle their own long-running computation tasks which are considered as a form of distributed computing.  The volunteer computing has different ways such as: the resources can be trusted; which would assume that a PC does not return results that are intentionally wrong and will not falsify, therefore there is no need for replication. Also, there is no need for screensaver graphics, usually it is desirable to have a computation be completely invisible and out of the control of the user of the PC and then the deployment of the information is automated.  The grand vision is often presented as an analogy to power grids where users (or electrical appliances) get access to electricity through wall sockets with no care or consideration for where or how the electricity is actually generated. In this view of grid computing, computing becomes pervasive and individual users (or client applications) gain access to computing resources (processors, storage, data, applications, and so on) as needed with little or no knowledge of where those resources are located or what the underlying technologies, hardware, operating system, and so on are.
                For an understanding of the project, an introduction of Mapping Cancer Markers is important. First, Tumor markers, also known as biomarkers, are found in a higher amount in blood, urine, or even some individuals with cancer.  Tumor markers help physicians indicate cancer and the corresponding treatment.  The markers are mostly used to screen high-risk individuals because it helps to find cancer in healthy or high-risk individuals before symptoms are developed.  The tumor markers can help physicians to predict cancer behavior and respond, to heighten the patient’s chance of recovery. The recovery consists of a treatment plan, which tumor markers help to decide if chemotherapy or immunotherapy should be used after surgery or radiation therapy.  There are other tumor markers that help a physician choose a prescription regimen for each individual patient.  The markers will also allow physicians and their patients to monitor for a reoccurrence, which is significant for some patients due to a change within the count of tumor markers, which provides detection sooner.
                There are limitations of tumor markers. Physicians usually need other tests done, like a biopsy, to determine if there is a presence of a particular tumor marker is a cause for concern. Tumor markers can have an elevated level which may be caused by a condition or disease other than cancer, some individuals have tumor markers levels that may be higher than usual that do not have cancer.  There is variation in tumor markers over time which causes inconsistent results and the level of tumor marker may not rise until after the progression of the cancer which does not help in early detection.
                The tumor markers are tested via a blood or urine which is sent for analysis. The biopsy sample, is an example of a surgical specimen can also be used to find tumor markers. The tests have to have two requirements: specificity and sensitivity.  Specificity is important because if the test is not specific enough there could be a false positive which would mean an individual would have unnecessary tests and anxiety. Sensitivity is important as well, because it could suggest that a tumor is there or not all and would cause a false positive because the individual would not be responding to a treatment.
                Grid computing will help scientist screen to identify grouping of markers in the body to detect cancer which in the long run will help make cancer curable. The project will screen data extracted from tissue and blood samples from thousands of individuals or patients and will help to identify the characteristic chemical markers that are associated with certain types of cancers or tumor markers. This will also eventually help to determine the risk of developing certain cancers or tumors and will allow for a better treatment that is effective for a specific individual or patient.
                There are specific tumor markers in cancer and they can be found on the following website. http://www.cancer.net/all-about-cancer/cancernet-feature-articles/treatments-tests-and-procedures/understanding-tumor-markers